Skip to main content

Table 2 Total number of genes measurable by RNA-seq and exon arrays at the three probeset confidence levels investigated, for Ensembl ids found in both Rn4 and Rn5 genome builds

From: A comparison of RNA-seq and exon arrays for whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat

Core confidence probesets RNA-seq: Totals
Detectable Not detectable
Microarray: Detectable 7153 5 7158
Not detectable 13638 118 13756
  Totals 20791 123 20914
Core and extended confidence probesets RNA-seq: Totals
Detectable Not detectable
Microarray: Detectable 13042 13 13055
Not detectable 7749 110 7859
  Totals 20791 123 20914
Core, extended and full confidence probesets RNA-seq: Totals
Detectable Not detectable
Microarray: Detectable 15492 26 15518
Not detectable 5299 97 5396
  Totals 20791 123 20914
  1. Overlap between genes measurable by either platform, for all core probesets only (top table), core + extended probesets (middle table-the set of probesets used in this study), and core + extended + full probesets (bottom table).